PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 344aa    MW: 35829.6 Da    PI: 6.7966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003007.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-15191237455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Do003007.1 191 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 237
                 5999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-19191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-13192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17192246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-16192241No hitNo description
SMARTSM003535.1E-17193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQHPSTAAPT ASAYQDGSGA GSSGAGDREA VFPSLQALRS  60
GASPSQSHAV AASVRVCDLT VQVDHRTNSS SSGDSPGAGA AMDHGAAAGW SPHTARSRTT  120
GLGGGSNSRP MSWNFSAASA QPTGESAGVC LAPPDAAAAA RVQLASAGRR GGSAGSAAAT  180
AAASSPGPVQ DHIIAERRRR EKINQRFIEL STVIPGLKKM DKATILGDAV KYVRELQEKV  240
KTLEEDGAHS GAGSSIQSAV IFKKPCHLPE DEAMASSHGG DDGMQLPEIE ARLSEKSVLL  300
RIHCYSARGL LVEEGFSTTV DEIVRSINSV LHQHYSSSSE ETRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200ERRRRE
2196201RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963289.11e-147PREDICTED: anthocyanin regulatory Lc protein-like isoform X2
RefseqXP_004963288.11e-147PREDICTED: transcription factor MYC3-like isoform X1
TrEMBLK3Z6K21e-146K3Z6K2_SETIT; Uncharacterized protein
STRINGSb08g022760.11e-153(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein